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We have built a functional analysis pipeline for proteomic data based on the logic programming paradigm which originated in artificial intelligence. Our pipeline also has access to R's statistical prowess. We have already used this model to analyse SILAC-based proteomics and other experiments of varied designs.

                                     Heatmaps generation                                                             Gene-Ontology analysis

                    Protein-protein interaction networks                                                         Functional clustering

                             Venn diagrams                                                                                         Km-plotting analysis (clinical)